PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF003800010CFD_t1
Common NameTRAES_3BF003800010CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 576aa    MW: 60268.9 Da    PI: 7.2046
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF003800010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-30306364259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  TRAES3BF003800010CFD_t1 306 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRTILITTYEGTHNHP 364
                              7***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-33290366IPR003657WRKY domain
SuperFamilySSF1182908.5E-28298366IPR003657WRKY domain
PROSITE profilePS5081129.505300366IPR003657WRKY domain
SMARTSM007741.3E-36305365IPR003657WRKY domain
PfamPF031067.4E-27307364IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MDKGHLGGGG GGGGLLALDA SPRQLGFLNL LSPAPFHRSM EADDGGGGGG GGRGRRSIEV  60
DFFSDEKKNM KKSRASAGAD AEDHKDQASA AGLAIKKEDL TINLLPGNNT RSDRSMVVDD  120
DGASRADQDR NGRNTGELAV IQAELSRMNE ENQRLRGMLT QVNNSYHALQ MHLVALMQQR  180
TQMPPVQPQQ PPTHEDGKNE SAIVPRQFLG LGPSGASADV AEEPSNSSTE VGSPRRSSSN  240
GNEDPERGEN PDGPSTAGWL PGRGMSQQQQ QQLGAAAKGH DQQAQEATMR KARVSVRARS  300
EAPIIADGCQ WRKYGQKMAK GNPCPRAYYR CTMATGCPVR KQVQRCAEDR TILITTYEGT  360
HNHPLPPAAM AMASTTSAAA SMLLSGSMPS ADGAGLMSSN FLARTVLPCS SSMATISASA  420
PFPTVTLDLT HAPPGAPNAM PLNVARPHAP GQFHVPMPGG GMAPAFAMPP HMLYNQSKFS  480
GLQMSSDSVD AGQFAQPRPP MGLPGQLSDT VSAAAAAITA DPNFTVALAA AISSIMAGQH  540
AAGNSNANNS NNNTSNNNVT TTSNNTTSNN TNSETQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-22292368176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574520.0AK357452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1053M21.
GenBankAK3648000.0AK364800.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028I03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566323.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9C5191e-131WRKY6_ARATH; WRKY transcription factor 6
TrEMBLA0A077RRI20.0A0A077RRI2_WHEAT; Uncharacterized protein
STRINGMLOC_68299.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52653656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-114WRKY family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]